Publications

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Büchel F, Wrzodek C, Mittag F, Dräger A, Eichner J, Rodriguez N, Le Novère N, Zell A. Qualitative translation of relations from BioPAX to SBML qual. Bioinformatics 2012;28(20):2648-53.
Büchel F, Rodriguez N, Swainston N, Wrzodek C, Czauderna T, Keller R, Mittag F, Schubert M, Glont M, Golebiewski M, van Iersel M, Keating S, Rall M, Wybrow M, Hermjakob H, Hucka M, Kell DB, Müller W, Mendes P, Zell A, Chaouiya C, Saez-Rodriguez J, Schreiber F, Laibe C, Drager A, Le Novère N. Path2Models: Large-scale generation of computational models from biochemical pathway map [Internet]. BMC Systems Biology 2013;7:116.Available from: http://arxiv.org/abs/1307.7005
Boras V, Fucic A, Virag M, Gabric D, Blivajs I, Tomasovic-Longaric C, Rakusic Z, Bisof V, Le Novère N, Vrdoljak DV. Significance of stroma in biology of oral squamous cell carcinoma. Tumori 2018;104(1):9-14.
Bergmann FT, Cooper J, Le Novère N, Nickerson DP, Waltemath D. Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2. Journal of Integrative Bioinformatics 2015;12(2):262.
Bergmann FT, Rodriguez N, Le Novère N. COMBINE archive specification Version 1. Journal of Integrative Bioinformatics 2015;12(2):261.
Bergmann FT, Adams R, Moodie S, Cooper J, Glont M, Golebiewski M, Hucka M, Laibe C, Miller AK, Nickerson DP, Olivier BG, Rodriguez N, Sauro HM, Scharm M, Soiland-Reyes S, Waltemath D, Yvon F, Le Novère N. COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project [Internet]. BMC Systems Biology 2014;15:369 .Available from: http://arxiv.org/abs/1407.4992
Bergmann FT, Cooper J, König M, Moraru I, Nickerson D, Le Novère N, Olivier BG, Sahle S, Lucian S, Waltemath D. Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). Journal of Integrative Bioinformatics 2018;15(1):20170086.
Beal J, Nguyen T, Gorochowski TE, Goñi-Moreno A, Scott-Brown J, McLaughlin JAlastair, Madsen C, Aleritsch B, Bartley B, Bhakta S, Bissell M, Castillo-Hair S, Clancy K, Luna A, Le Novère N, Palchick Z, Pocock M, Sauro H, Sexton J, Tabor J, Voigt C, Zundel Z, Myers C, Wipat A. Communicating Structure and Function in Synthetic Biology Diagrams [Internet]. ACS Synthetic Biology 2019;8(8):1818-1825.Available from: https://pubs.acs.org/doi/10.1021/acssynbio.9b00139
Bargehr J, Ong LP, Colzani M, Davaapil H, Hofsteen P, Bhandari, iv S, Gambardella L, Le Novère N, Iyer D, Sampaziotis F, Weinberger F, Bertero A, Leonard A, Bernard WG, Martinson A, Figg N, Regnier M, Bennett MR, Murry CE, Sinha S. Human embryonic stem cell-derived epicardial cells augment cardiomyocyte-driven heart regeneration [Internet]. Nature Biotechnology 2019;37:895–906.Available from: https://www.nature.com/articles/s41587-019-0197-9
Baldi BF, Hoyer C, Le Novère N. Schizophrenic: forever young?. Genome Med 2010;2(5):32.