Supporting SBML as a model exchange format in software applications.

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TitleSupporting SBML as a model exchange format in software applications.
Publication TypeJournal Article
Year of Publication2013
AuthorsKeating, SM, Le Novère, N
JournalMethods Mol Biol
Volume1021
Pagination201-25
Date Published2013
ISSN1940-6029
KeywordsComputer Simulation, Database Management Systems, Humans, Information Storage and Retrieval, Models, Biological, Programming Languages, Reproducibility of Results, Systems Biology
Abstract

<p>This chapter describes the Systems Biology Markup Language (SBML) from its origins. It describes the rationale behind and importance of having a common language when it comes to representing models. This chapter mentions the development of SBML and outlines the structure of an SBML model. It provides a section on libSBML, a useful application programming interface (API) library for reading, writing, manipulating and validating content expressed in the SBML format. Finally the chapter also provides a description of the SBML Toolbox which provides a means of facilitating the import and export of SBML from both MATLAB and Octave ( http://www.gnu.org/software/octave/) environments.</p>

DOI10.1007/978-1-62703-450-0_11
Alternate JournalMethods Mol. Biol.
PubMed ID23715987